YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COS12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGAKFENTV AFLPSEIFDC YNSTLPKNVF RSFVTWSCYE KFNSLEFRTW LLMWLPLIIA  60
   61 WKIRGKRHYL VIVTALMFEV LYFLWTYSYI FRERTLGKQV SQFAKEIITN TPGIDTEDWE 120
  121 RVAVNFNSYL YENKLWNTEY FFFDGSSCQE AFRKMLLEPF SLKKNDFANA KVPDGSVCYT 180
  181 EKALQVYFTQ IERKWHWINS EGFLHNKTTQ SVQFSKHGYG SKLLWAFKEV TIMNSRFAFF 240
  241 SIAYLNGLLT IPRLRNSLHI LYVCAVLSSM IIEYLIGIDK FRFKSMNLIH KLQFLSYITC 300
  301 GHEKSDATNW SQIAKRTNTY MFEQKIWNSP ILFSDGIDCE KFFKWYFSTP VSSQASLSVG 360
  361 STDFELWPYI KEAQSACNDV

Type	Start	End	Confidence
Cytoplasmic	1	46	0.89
Transmembrane Helix	47	63	0.59
Non-Cytoplasmic	64	68	0.53
Transmembrane Helix	69	91	0.86
Cytoplasmic	92	231	0.66
Transmembrane Helix	232	251	0.60
Non-Cytoplasmic	252	257	0.81
Transmembrane Helix	258	278	0.87
Cytoplasmic	279	380	0.82