YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VRG4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.74
Transmembrane Helix	16	37	0.82
Non-Cytoplasmic	38	51	0.71
Transmembrane Helix	52	74	0.90
Cytoplasmic	75	86	0.76
Transmembrane Helix	87	108	0.82
Non-Cytoplasmic	109	114	0.55
Transmembrane Helix	115	135	0.79
Cytoplasmic	136	141	0.53
Transmembrane Helix	142	163	0.68
Non-Cytoplasmic	164	183	0.82
Transmembrane Helix	184	202	0.94
Cytoplasmic	203	216	0.88
Transmembrane Helix	217	235	0.94
Non-Cytoplasmic	236	251	0.84
Transmembrane Helix	252	273	0.91
Cytoplasmic	274	279	0.83
Transmembrane Helix	280	300	0.87
Non-Cytoplasmic	301	305	0.83
Transmembrane Helix	306	325	0.95
Cytoplasmic	326	337	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELKTGHAG HNPWASVANS GPISILSYCG SSILMTVTNK FVVNLKDFNM NFVMLFVQSL  60
   61 VCTITLIILR ILGYAKFRSL NKTDAKNWFP ISFLLVLMIY TSSKALQYLA VPIYTIFKNL 120
  121 TIILIAYGEV LFFGGSVTSM ELSSFLLMVL SSVVATWGDQ QAVAAKAASL AEGAAGAVAS 180
  181 FNPGYFWMFT NCITSALFVL IMRKRIKLTN FKDFDTMFYN NVLALPILLL FSFCVEDWSS 240
  241 VNLTNNFSND SLTAMIISGV ASVGISYCSG WCVRVTSSTT YSMVGALNKL PIALSGLIFF 300
  301 DAPRNFLSIL SIFIGFLSGI IYAVAKQKKQ QAQPLRK