YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|212537627, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINNLLQALA RFLDRPLFPW KTVLVGFSLG QYVFESFLSL RQYRVLQHTK PPKVLEGEIT  60
   61 EKVFEDSQTY GRAKAKFGFF SGIYGQLQNL VFIYYDFLPK IWALTGVWLV RYFPSWSQGE 120
  121 IGHTLLFFFA FNILTTILSL PISYYSTFVL EEKFGFNKQT VGLWITDMLK GQALGLVLGG 180
  181 PIMAAVLKII QKTGNEFFYY LWIFSILVQV FAITIYPIVI LPMFNKLSPL EPGLIKTGVE 240
  241 DLAQKLKFPL HDIYSIDGSK RSAHSNAYFF GFPWKKHIVI YDTLMEKSEP EEVVAVLSHE 300
  301 LGHWKLGHTT KLFGIAQAHM LYIFALFTAF VNNKSLFQSF GFHNEQPIMI GFLLFSDALA 360
  361 PMDAVVKFLM NILSRKFEFE ADAFAANLGQ SKLLAQSLLK LQIQNLSTMD ADWMYASYHY 420
  421 SHPILTERLA ALGWKGKGAE KAEDSEKPVK AADREL

Type	Start	End	Confidence
Cytoplasmic	1	76	0.55
Transmembrane Helix	77	110	0.49
Non-Cytoplasmic	111	123	0.53
Transmembrane Helix	124	148	0.86
Cytoplasmic	149	167	0.57
Transmembrane Helix	168	190	0.84
Non-Cytoplasmic	191	197	0.58
Transmembrane Helix	198	220	0.93
Cytoplasmic	221	311	0.63
Transmembrane Helix	312	331	0.79
Non-Cytoplasmic	332	347	0.70
Transmembrane Helix	348	369	0.66
Cytoplasmic	370	456	0.72