YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111379070
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRV GANKFSERQP IGTAAQGDDK DYKEPPPAPL FEPGELCSWS FYRAGIAEFI  60
   61 ATFLFLYVSV LTVMGVVRAD SKCSTVGIQG IAWAFGGMIF ALVYCTAGIS GGHINPAVTF 120
  121 GLFLARKLSL TRAVYYMVMQ CLGAICGAGV VKGFEKGRYN SLGGGANVVN AGYTKGDGLG 180
  181 AEIVGTFVLV YTVFSATDAK RNARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS 240
  241 LGAAIIYNKD HAWDDHWIFW VGPFIGAAPA ALYHQVVIRA IPFKSK

Type	Start	End	Confidence
Cytoplasmic	1	55	0.82
Transmembrane Helix	56	77	0.85
Non-Cytoplasmic	78	90	0.74
Transmembrane Helix	91	114	0.85
Cytoplasmic	115	132	0.68
Transmembrane Helix	133	154	0.89
Non-Cytoplasmic	155	177	0.82
Transmembrane Helix	178	197	0.82
Cytoplasmic	198	207	0.89
Transmembrane Helix	208	228	0.89
Non-Cytoplasmic	229	255	0.89
Transmembrane Helix	256	277	0.92
Cytoplasmic	278	286	0.88