YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPN1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.99
Transmembrane Helix	91	115	0.87
Non-Cytoplasmic	116	122	0.84
Transmembrane Helix	123	143	0.93
Cytoplasmic	144	160	0.82
Transmembrane Helix	161	181	0.93
Non-Cytoplasmic	182	197	0.93
Transmembrane Helix	198	219	0.92
Cytoplasmic	220	226	0.85
Transmembrane Helix	227	245	0.89
Non-Cytoplasmic	246	270	0.88
Transmembrane Helix	271	293	0.89
Cytoplasmic	294	302	0.86
Transmembrane Helix	303	326	0.92
Non-Cytoplasmic	327	356	0.88
Transmembrane Helix	357	377	0.93
Cytoplasmic	378	397	0.86
Transmembrane Helix	398	416	0.96
Non-Cytoplasmic	417	421	0.73
Transmembrane Helix	422	442	0.83
Cytoplasmic	443	514	0.94
Transmembrane Helix	515	539	0.86
Non-Cytoplasmic	540	552	0.85
Transmembrane Helix	553	572	0.90
Cytoplasmic	573	579	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRDNMDTTK RKEDHTKHTT DVIEFYEEGT AASSLNIATE KANSSPSILR RIINRAAWLS  60
   61 KKVDAMGVES TGIQRISPYE RGTSKKQFLH VAGLWLSATG GLSSMSSFLL GPLLFGLSFR 120
  121 ESVASSLISV TIGCLIAAYC SIMGPQSGCR QMVTARYLFG WWFVKLVALA SIIGVMGWSV 180
  181 VNSVVGGEML AAISNDKVPL WVGIVIVTVC SFLVAIFGIK QVIKVETYLS VPVLTAFLLL 240
  241 YISSSDKYSF VNAYVSKGNL DSSTRKGNWM SFFSLCYSIT ATWGSITADY YILFPEDTPY 300
  301 IQIFCLTFFG TFLPTCFVGI LGLLLASVAM SYKPWSVEYD SHGMGGLLWA GFQRWNGFGK 360
  361 FCVVVLVFSL VSNNIINTYS AAFSIQLSSV FCAKIPRWFW SIVCTIICLV CALIGRNHFS 420
  421 TILGNFLPMI GYWISMYFIL LFEENLVFRR FFLHLYTKEF PTVTGEINGP ELVGSSKEVE 480
  481 KDAVTNIHLL KRKHKVTKHR YNWDKWEDYE VLTHGYAATF AFIVGVAGVV VGMAQAYWIG 540
  541 PIAAKFGEYG GDVAMWLSMA FSGVVYPPCR YLELRKFGR