YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|112180766
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGRGLLGAQV VPRAASSGVL CSLLVAGRML GWSRLTFILL SGIVTCLVAQ QVPPWTEDCR  60
   61 KSTYPPSGPT YRGPVPWYTI NLDLPPYKRW HELMVVKAPA LKVIVNSMKN IVNAFVPSGK 120
  121 IIHLVDQKLP GLLGNFPGPF EEEMKGIAAV TEIPLGEIIL FNIFYEFFTI CTSIITEDKE 180
  181 GHLLHGRNLD FGVFLGWNIN NDTWVITEEL KPLTVNLDFQ RNNKTLFKAT TFAGYVGMLT 240
  241 GFKPGLFSVT LNERFSIDGG FMGVMEWILG KKDAQWVGFI IRSVLENSTS YEETKNILTK 300
  301 TKILAPAYFI LGGNQSGEGC VITRDRKQSL DIYELDPKHG RWYVVQTNYD RWKNPFFLDD 360
  361 RRTPAKMCLN QTTQENISFA TIYDVLSTKP ILNKLTVYTV LIDVTKGQFE TYLRDCPDPC 420
  421 IGW

Type	Start	End	Confidence
Cytoplasmic	1	9	0.67
Transmembrane Helix	10	32	0.53
Non-Cytoplasmic	33	423	0.86