YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|112180653
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNLTFTNSI LLVEGLKVTP QSSQPVFIMF LLAYIFAMVS NIGLIFLIST EKNLHDPMHF  60
   61 LFCNLPLNDI MGTTVIMPRL LQDILTEASE RYISYAECAI QAYFVHVFTA ACHYVLMIMA 120
  121 FDRYVAICNP LRYTAIMTNK MVIALSALAW GLAIIFVTIM VGLSLRLSRC RYKIENPFCD 180
  181 NASLFKLSCE NVSVNNVFGL VYTVIVLSVS ALSIFVTYVK IATVCVTSKN KALNSKAIKT 240
  241 CSTHLAVYLI MFVTGAVFIF LHRFPEYSDN RKLASIMFHI VPPGLNPLVY GLQTKEIRQK 300
  301 VVKLWCRKKS MITQ

Type	Start	End	Confidence
Cytoplasmic	1	25	0.60
Transmembrane Helix	26	49	0.91
Non-Cytoplasmic	50	101	0.63
Transmembrane Helix	102	121	0.86
Cytoplasmic	122	140	0.70
Transmembrane Helix	141	162	0.90
Non-Cytoplasmic	163	199	0.81
Transmembrane Helix	200	222	0.85
Cytoplasmic	223	240	0.83
Transmembrane Helix	241	262	0.91
Non-Cytoplasmic	263	274	0.77
Transmembrane Helix	275	294	0.53
Cytoplasmic	295	314	0.63