YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIP5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSNNSSFLD IDDDLEGVDD FGNEPNPFDD ATVPDSPNMN NSTAGKGSEF YNTTGSKAES  60
   61 APLQGQMDPP AYDQVIGQND NDGLGRNGLR PGLINYYSKY FQIDLTQFKK RLSAVLTFRN 120
  121 DHNSESNEDN TDLYGAVWIT ATVVMINFTM SRGLNFIISD VIEGVKTGED IDRASQFKKL 180
  181 LHSIWLFYGY TFGVPFITMQ VLNRDEHSER NRSFKSVPEL ISVYGYANLI WIPVCVILNI 240
  241 LDMSKRLRTV QAIQWAIVAL GWAQSSYFLN SQISSNNNTE TQSNGKFSLS IIVVVALHTL 300
  301 FCLLFRFIIF

Type	Start	End	Confidence
Cytoplasmic	1	180	0.69
Transmembrane Helix	181	202	0.79
Non-Cytoplasmic	203	219	0.86
Transmembrane Helix	220	241	0.88
Cytoplasmic	242	250	0.76
Transmembrane Helix	251	269	0.89
Non-Cytoplasmic	270	286	0.81
Transmembrane Helix	287	309	0.91
Cytoplasmic	310	310	0.89