YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCS3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKWFNAIH LLVCPLTVLV GYLMNAYGYG AALQATLNKD GLVNAMLVKK GWFWTSLVGW  60
   61 WCIIRYRAVP GATGRDRRHI VQSFKRYAIL TVWWYVFTQG IWFGVGPIMD LVFVYTGGHC 120
  121 HYDVFDDAGH VNEDFQGSVT RTNRALALIH NVLTLHGHHQ EHRQQQLWDR SIGSIQGALQ 180
  181 ATQPKTPKNV TASAAAAINT FIHDQMHRWQ GPLTTSAQCR RFGGHWAGGH DPSGHVFLAT 240
  241 LMCMFLLGEL RVFGRRALAH LYAQKWQLVR LVTRLFDTGP LWTWRRCGGG SMTCGARLWR 300
  301 AIVEPPVTCA AALLRLTRCI ACDHPVIILL TLLVTWLWQL LLTAVASRFH TVREHMSGLL 360
  361 AAYIVTGLVY ARDAAALRPV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.92
Transmembrane Helix	8	29	0.90
Non-Cytoplasmic	30	50	0.87
Transmembrane Helix	51	69	0.94
Cytoplasmic	70	89	0.89
Transmembrane Helix	90	109	0.91
Non-Cytoplasmic	110	232	0.98
Transmembrane Helix	233	253	0.92
Cytoplasmic	254	320	0.92
Transmembrane Helix	321	342	0.84
Non-Cytoplasmic	343	354	0.63
Transmembrane Helix	355	374	0.77
Cytoplasmic	375	380	0.72