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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|82582275
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPSPTPSA PAESAAAEND FLAPDAGLKP PGPTPSQSRF QVDLVAEAAG ATEDKSPSSD  60
   61 ASTTVPSSDK ATPTAPSDGP GSDPGAGGEE AKGRFRVVNF ADPSGAGSAA SPEGPADGLQ 120
  121 NGDTVMSETS LHSSTGGQHH YHYDTHTNTY YLRTFGHNTI DAVPNIDFYR QTAAPLGEKL 180
  181 IRPTLSELHD ELDKEPFEDG FANGDELTPA EETAAKESAE SKGVVKFGWV KGVLVRCMLS 240
  241 IWGVMLFIRM SWIVGQSGIA LSCLIVAMAS VVTTITGLST SAIATNGFVR GGGAYYLISR 300
  301 SLGPEFGGSI GLIFAFANAV AVAMYVVGFA ETVVELLAGV DAVMTDEIND IRIIGTITVI 360
  361 LLLGISVAGM EWEAKAQIFL LVVLITAIIN YFIGTFISVE SKEPFGYFGY DGSIMWENMG 420
  421 PDFRGETFFS VFAIFFPAAT GILAGANISG DLADPQQAIP RGTLLAILIT GIVYLGVAVS 480
  481 TGSCIVRDAS GHVNDTVSSQ FKANCTDAAC NFGYDFSTCK SENSCRYGLH NDFQVMSLVS 540
  541 GFGPIITAGI FSATLSSALA SLVSAPKVFQ ALCKDNIYPG LGMFAKGYGK NNEPLRGYIL 600
  601 TFVIALAFIL IAQLNVIAPI ISNFFLASYA LINFSVFHAS LANSPGWRPS FKYYNMWVSL 660
  661 AGAILCCVVM FVINWSAALL TNVIVLGLFI YVSYKKPDVN WGSSTQALTY HQALTHTLHL 720
  721 SGVEDHVKNF RPQCLVMTGY PNSRPALLDL VHSFTKNVGL MMCGHVRTGY RRPNFKDLAT 780
  781 DQARYQRWLL KNESKAFYTP VFAEDMRQGT QYLLQAAGLG RLKPNTLVLG FKNDWRDGDM 840
  841 MNVETYISMI YDAFDFQFGA VILRLKEGLD VSHIQGQDDL LSSQEKSSGM KDVIVSIDTS 900
  901 KDSDGDSSKP SSKATSLQNS PAIQKDDDDD GKATTQPLLK KDKKSPTVPL NVSDQRLLEA 960
  961 SQQFQKKQGK GTVDVWWLFD DGGLTLLIPY LLTNKKRWKD CKIRVFIGGK INRIDHDRRA1020
 1021 MATLLSKFRI DFSDITVLGD INTKPKKEHV TAFEELIEPY RLKEDDMEQE AAERLKNSEP1080
 1081 WRITDNELEL YRAKTNRQIR LNELLKEHSS TANLIVMSLP LARKGAVSSA LYMAWLEALS1140
 1141 KDLPPILLVR GNHQSVLTFY S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle