YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LCL3
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREGDSNSKK SADVAVLSII LTGSTLTLIY TYKRYLTQFK RTNDIPRRIF RKHWLYGKVT  60
   61 SVGDGDNFHF FHMPGGIRGG WGWLRPVPQM IKNDSTAEKL VGDSRNMRFF NFNWITHGRS 120
  121 TKSKIQKAKS QFLKLNVPYK NRKNLPTIPI RLCGIDAPER AHFGNPAQPF GNEALIWLQN 180
  181 RILGKKVWVK PLSIDQYNRC VARVSYWDWF GGWKDLSLEM LKDGLAVVYE GKVNTEFDDR 240
  241 EDKYRYYEFL ARSRKKGLWI QNKFETPGEY KKRI

Type	Start	End	Confidence
Cytoplasmic	1	11	0.62
Transmembrane Helix	12	32	0.68
Non-Cytoplasmic	33	274	0.91