YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GUP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.96
Transmembrane Helix	42	61	0.91
Non-Cytoplasmic	62	129	0.68
Transmembrane Helix	130	157	0.76
Cytoplasmic	158	166	0.37
Transmembrane Helix	167	186	0.68
Non-Cytoplasmic	187	278	0.59
Transmembrane Helix	279	301	0.69
Cytoplasmic	302	317	0.76
Transmembrane Helix	318	339	0.90
Non-Cytoplasmic	340	353	0.76
Transmembrane Helix	354	373	0.91
Cytoplasmic	374	429	0.83
Transmembrane Helix	430	447	0.66
Non-Cytoplasmic	448	453	0.58
Transmembrane Helix	454	474	0.93
Cytoplasmic	475	481	0.57
Transmembrane Helix	482	506	0.84
Non-Cytoplasmic	507	523	0.63
Transmembrane Helix	524	545	0.88
Cytoplasmic	546	560	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLISILSPL ITSEGLDSRI KPSPKKDAST TTKPSLWKTT EFKFYYIAFL VVVPLMFYAG  60
   61 LQASSPENPN YARYERLLSQ GWLFGRKVDN SDSQYRFFRD NFALLSVLML VHTSIKRIVL 120
  121 YSTNITKLRF DLIFGLIFLV AAHGVNSIRI LAHMLILYAI AHVLKNFRRI ATISIWIYGI 180
  181 STLFINDNFR AYPFGNICSF LSPLDHWYRG IIPRWDVFFN FTLLRVLSYN LDFLERWENL 240
  241 QKKKSPSYES KEAKSAILLN ERARLTAAHP IQDYSLMNYI AYVTYTPLFI AGPIITFNDY 300
  301 VYQSKHTLPS INFKFIFYYA VRFVIALLSM EFILHFLHVV AISKTKAWEN DTPFQISMIG 360
  361 LFNLNIIWLK LLIPWRLFRL WALLDGIDTP ENMIRCVDNN YSSLAFWRAW HRSYNKWVVR 420
  421 YIYIPLGGSK NRVLTSLAVF SFVAIWHDIE LKLLLWGWLI VLFLLPEIFA TQIFSHYTDA 480
  481 VWYRHVCAVG AVFNIWVMMI ANLFGFCLGS DGTKKLLSDM FCTVSGFKFV ILASVSLFIA 540
  541 VQIMFEIREE EKRHGIYLKC