YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDNSEKLQ VQGEEKKSKQ PVNFLPQGKW LKPNEIEYEF GGTTGVIGML IGFPLLMYYM  60
   61 WICAEFYHGK VALPKAGESW MHFIKHLYQL VLENGIPEKY DWTIFLTFWV FQIIFYYTLP 120
  121 GIWTKGQPLS HLKGKQLPYF CNAMWTLYVT TTLVLVLHFT NLFRLYVIID RFGRIMTCAI 180
  181 ISGFAFSIIL YLWTLFISHD YHRMTGNHLY DFFMGAPLNP RWGILDLKMF FEVRLPWFTL 240
  241 YFITLGACLK QWETYGYVTP QLGVVMLAHW LYANACAKGE ELIVPTWDMA YEKFGFMLIF 300
  301 WNIAGVPYTY CHCTLYLYYH DPSEYHWSTL YNVSLYVVLL CAYYFFDTAN AQKNAFRKQM 360
  361 SGDKTGRKTF PFLPYQILKN PKYMVTSNGS YLLIDGWYTL ARKIHYTADW TQSLVWALSC 420
  421 GFNSVFPWFF PVFFLVVLIH RAFRDQAKCK RKYGKDWDEY CKHCPYVFIP YVF

Type	Start	End	Confidence
Cytoplasmic	1	39	0.68
Transmembrane Helix	40	62	0.87
Non-Cytoplasmic	63	101	0.63
Transmembrane Helix	102	124	0.84
Cytoplasmic	125	138	0.58
Transmembrane Helix	139	162	0.81
Non-Cytoplasmic	163	172	0.52
Transmembrane Helix	173	197	0.87
Cytoplasmic	198	232	0.59
Transmembrane Helix	233	249	0.70
Non-Cytoplasmic	250	293	0.43
Transmembrane Helix	294	319	0.81
Cytoplasmic	320	326	0.46
Transmembrane Helix	327	346	0.87
Non-Cytoplasmic	347	414	0.60
Transmembrane Helix	415	443	0.73
Cytoplasmic	444	473	0.85