YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COS4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKENELKNEK SVDVLSFKQL ESQKIVLPQD LFRSSFTWFC YEIYKSLAFR IWMLLWLPLS  60
   61 VWWKLSNNWI YPLMVSLLVL FWGPVFVLVI FRLSRKRSLS KQLTQFCKEI TKSTPSSDPH 120
  121 DWEVVAANLN SYLYENKAWN IRYFFFNAMG CQEAFRTTLL EPFSLKKDEA AKVKSFKDSV 180
  181 PYIEEALGVY FREVEKQWKL FNSEKSWSPV GLEDAKLPKE AYRFKLTWFL KRISNIFMLI 240
  241 PFLNFLCCIY VSRGMCLLLR TLYLGWILFM LVQGFQNIRV LIMSMEHKMQ FLSTIINEQE 300
  301 SGANGWDEIA RKMNRYLFEK KVWKNEEFFF DGIDCEWFFS HFFYRVLSAK KSMRALSLNV 360
  361 ELWPYIKEAQ LSCSEESLA

Type	Start	End	Confidence
Cytoplasmic	1	45	0.91
Transmembrane Helix	46	63	0.86
Non-Cytoplasmic	64	69	0.79
Transmembrane Helix	70	91	0.93
Cytoplasmic	92	232	0.98
Transmembrane Helix	233	254	0.91
Non-Cytoplasmic	255	261	0.76
Transmembrane Helix	262	282	0.91
Cytoplasmic	283	379	0.98