YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGP3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.99
Transmembrane Helix	58	79	0.92
Non-Cytoplasmic	80	84	0.87
Transmembrane Helix	85	106	0.90
Cytoplasmic	107	126	0.84
Transmembrane Helix	127	147	0.92
Non-Cytoplasmic	148	165	0.91
Transmembrane Helix	166	188	0.90
Cytoplasmic	189	194	0.90
Transmembrane Helix	195	216	0.92
Non-Cytoplasmic	217	236	0.91
Transmembrane Helix	237	260	0.84
Cytoplasmic	261	279	0.92
Transmembrane Helix	280	299	0.94
Non-Cytoplasmic	300	329	0.94
Transmembrane Helix	330	352	0.86
Cytoplasmic	353	375	0.90
Transmembrane Helix	376	398	0.87
Non-Cytoplasmic	399	405	0.73
Transmembrane Helix	406	427	0.94
Cytoplasmic	428	447	0.95
Transmembrane Helix	448	469	0.93
Non-Cytoplasmic	470	483	0.81
Transmembrane Helix	484	503	0.93
Cytoplasmic	504	558	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLNLKRET VDIEETAKKD IKPYFASNVE AVDIDEDPDV SRYDPQTGVK RALKNRHISL  60
   61 LALGGVIGPG CLVGAGNALN KGGPLALLLG FSIIGIIAFS VMESIGEMIT LYPSGGGFTT 120
  121 LARRFHSDAL PAVCGYAYVV VFFAVLANEY NTLSSILQFW GPQVPLYGYI LIFWFAFEIF 180
  181 QLVGVGLFGE TEYWLAWLKI VGLVAYYIFS IVYISGDIRN RPAFGFHYWN SPGALSHGFK 240
  241 GIAIVFVFCS TFYSGTESVA LAATESKNPG KAVPLAVRQT LWRILVVYIG IAVFYGATVP 300
  301 FDDPNLSAST KVLKSPIAIA ISRAGWAGGA HLVNAFILIT CISAINGSLY IGSRTLTHLA 360
  361 HEGLAPKILA WTDRRGVPIP AITVFNALGL ISLMNVSVGA ANAYSYIVNL SGVGVFIVWG 420
  421 VISYTHLRIR KAWVAQGRSI EELPYEALFY PWTPVLSLAA NIFLALIQGW SYFVPFDAGN 480
  481 FVDAYILLPV GILLYIGICV FKSNHFRTVD LRSINLDEGR RKDMEADLSD QESSLASSET 540
  541 MKDYKSATFF RYLSNIFT