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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|111153730, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPEGEGGSG PRHRRGGTGP RAGRGSRGRD PWQDNAGDPD HRADEWPDGA GQPHLDPDRS  60
   61 YPGSDQRYPG GGRSFPGDGR SHPDPGGPHP DRDERYPSLD QRYLDPADRY PGPDGQPGIP 120
  121 DDIYRDRHDG YRRRDGDYTH QSYGDGPYSE RPNAGGPHGD EPYAGDSYVD ASYVDDSYVD 180
  181 DSYADGAYAE GPPTDGQYPG RARRAAYPER RFGDHDPAGR FDAPRGGDDR WADPRDGAAA 240
  241 RPVPSPGSPR AAAAEATRKL PSSPRTPPPP PGVPPPSERG PGSAAPGRVQ PAAPVDGTRT 300
  301 TRLPTPPSPQ PAGPMPGRRP QAEPGPPPAQ VGRLTGPGSA GPGPAGSGPA GPGSIDAGSI 360
  361 DAGSAGSDFT GRGSREQQPD PDDRPRRFAG ERRRPSLGES RPTVALPRSN VRRIPPESHQ 420
  421 HGRARDGGRG RDTALPPEAR DGRAGRDPRS RDRRDETRRG EARRGAERDG ALGGWRDDPV 480
  481 ADPRAGGRVG EVSDGGGRGD GGNVGYGGGV GQDDLRDVRA ARPRTPTPRE TGGRTARRDP 540
  541 SRRRNPRPAD AAATTALAKP STAKAATPPP TSAQSTRAPS TRAQPTRAQP TTAKPTTARR 600
  601 GKSGAGKSGP SLGQASGIMA IGTIVSRASG FLRTVAIAAA LGTSGVSQAY NVANTTPNVL 660
  661 YDLLLGGILT SVIVPVMVRA AKEDPDGGDR FASSLLTIMI LGLGAAVAVG MLVAPWITDA 720
  721 YLHAGSAERA LGTEMLRWFL PQIVFYGVGA TIGAILNVRQ SFAAPMFAPI LNNLIVIATC 780
  781 VAFVYVVSGP HPPGVDGPKA ISNAQITVLA GGTTLGVVAM TLALLPSLRK VGFRYRPRLD 840
  841 LRHPELRSAA RLAGWTLLFV IVSQIGYLVI VNLSTASTAY TIYTYGYQIF QLPYAIIGVS 900
  901 VITALLPRMS GHAAQGRRDL VRADISTATR VAVTAIVPAA LFILALGRPI AVAVFYHGAV 960
  961 RYHAAVDIGD TLSAFALALV PFSLFQVQLR AFYAYQDSRT PALVNMGVVA VNVLGAVVLT1020
 1021 VLVPEQHRAP ALALAFAFAY LVGLAATTIL LRRRLGGVDG NRTARVITQV AVAAGFGAVI1080
 1081 ASLLARGIRA VIGTGWLSSG IAVVIAAVVG GALFIAVARR MNVHEVNALT EVVNGRLRRG1140
 1141 RGRPGGPTAA PTAAGRTGRP ARADRTDRTD RAGRREPSSR TGARAPTPPR RDDPDDRSGP1200
 1201 ATGTRRNGRT PRRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle