YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXT10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.99
Transmembrane Helix	43	65	0.92
Non-Cytoplasmic	66	98	0.96
Transmembrane Helix	99	118	0.94
Cytoplasmic	119	127	0.78
Transmembrane Helix	128	147	0.96
Non-Cytoplasmic	148	153	0.91
Transmembrane Helix	154	176	0.92
Cytoplasmic	177	187	0.81
Transmembrane Helix	188	206	0.93
Non-Cytoplasmic	207	218	0.80
Transmembrane Helix	219	240	0.89
Cytoplasmic	241	304	0.96
Transmembrane Helix	305	329	0.76
Non-Cytoplasmic	330	345	0.82
Transmembrane Helix	346	365	0.94
Cytoplasmic	366	372	0.93
Transmembrane Helix	373	394	0.93
Non-Cytoplasmic	395	412	0.86
Transmembrane Helix	413	436	0.91
Cytoplasmic	437	447	0.90
Transmembrane Helix	448	470	0.89
Non-Cytoplasmic	471	475	0.83
Transmembrane Helix	476	496	0.92
Cytoplasmic	497	546	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSSVSILG TSAKASTSLS RKDEIKLTPE TREASLDIPY KPIIAYWTVM GLCLMIAFGG  60
   61 FIFGWDTGTI SGFINQTDFK RRFGELQRDG SFQLSDVRTG LIVGIFNIGC ALGGLTLGRL 120
  121 GDIYGRKIGL MCVILVYVVG IVIQIASSDK WYQYFIGRIV SGMGVGGVAV LSPTLISEIS 180
  181 PKHLRGTCVS FYQLMITLGI FLGYCTNYGT KKYSNSIQWR VPLGLCFAWA IFMVIGMVMV 240
  241 PESPRYLVEK GKYEEARRSL AKSNKVTVTD PGVVFEFDTI VANMELERAV GNASWHELFS 300
  301 NKGAILPRVI MGIVIQSLQQ LTGCNYFFYY GTTIFNAVGM QDSFETSIVL GAVNFASTFV 360
  361 ALYIVDKFGR RKCLLWGSAS MAICFVIFAT VGVTRLWPQG KDQPSSQSAG NVMIVFTCFF 420
  421 IFSFAITWAP IAYVIVAETY PLRVKNRAMA IAVGANWMWG FLIGFFTPFI TRSIGFSYGY 480
  481 VFMGCLIFSY FYVFFFVCET KGLTLEEVNE MYEERIKPWK SGGWIPSSRR TPQPTSSTPL 540
  541 VIVDSK