YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCS2
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVEISPDV LVYKSPLTEQ STEYASISNN SDQTIAFKVK TTAPKFYCVR PNAAVVAPGE  60
   61 TIQVQVIFLG LTEEPAADFK CRDKFLVITL PSPYDLNGKA VADVWSDLEA EFKQQAISKK 120
  121 IKVKYLISPD VHPAQNQNIQ ENKETVEPVV QDSEPKEVPA VVNEKEVPAE PETQPPVQVK 180
  181 KEEVPPVVQK TVPHENEKQT SNSTPAPQNQ IKEAATVPAE NESSSMGIFI LVALLILVLG 240
  241 WFYR

Type	Start	End	Confidence
Non-Cytoplasmic	1	224	0.73
Transmembrane Helix	225	243	0.94
Cytoplasmic	244	244	0.72