YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMN3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.54
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	290	0.99
Transmembrane Helix	291	313	0.91
Cytoplasmic	314	365	0.97
Transmembrane Helix	366	390	0.85
Non-Cytoplasmic	391	405	0.86
Transmembrane Helix	406	428	0.90
Cytoplasmic	429	455	0.94
Transmembrane Helix	456	477	0.93
Non-Cytoplasmic	478	494	0.83
Transmembrane Helix	495	517	0.89
Cytoplasmic	518	552	0.93
Transmembrane Helix	553	572	0.94
Non-Cytoplasmic	573	591	0.85
Transmembrane Helix	592	617	0.87
Cytoplasmic	618	634	0.90
Transmembrane Helix	635	656	0.82
Non-Cytoplasmic	657	665	0.67
Transmembrane Helix	666	692	0.82
Cytoplasmic	693	706	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVRPKRSVI TLMAIVVVML ILRNQFYSSR TRGHGQEPVI SSSQKNLYDG WITPNFYRKG  60
   61 DPLELIVNKV ESDLTQLPYA YYDLPFTCPP TMHKKPLHLS LNEIIRGDRK WESDYKLKFG 120
  121 EDNPCETLCA RKTTKEGMQT LDKLVREGYV VQWLIDDELP AATTFISTTD HKKYYASGFP 180
  181 LGFIDPDTDK TYLHNHVMLV IRFHASDNDK NTIVGFEVYP RSVSDYHCPG ASKNYEQYEI 240
  241 VIPEDENELT YLPFTYSVYW REEFEVDWNH RWDYFLNAGE LSDEQSIQFH WMSLANSVGI 300
  301 VLSISFITLI IYVRVMYTDK SNSKSPKYMI NIEGIETEDD LDDDKYGKYS VYTVAKDWIQ 360
  361 NGRPNLFGLK VLILLVSFGV QFLFTIIGSL TISCSMNKLH NVRNSVLTMA ILFFVLGAFM 420
  421 ASFVGTRLSM VTKTKRTKAN YLDDNRYLKD YKKFSPIFTI LCGSSLPGIV MVSTFLLNSI 480
  481 VWAHDSTSAL PFKTIVFFMS IYFIVCIPLS LFGGIVANNI PLPQYWLSGI TKDESNSDGN 540
  541 GLFVPKSRAK FNPLVYCGIY LCGIFPLLVI YVEMQYVYKS LWLEKTTFYY FYGFLFLSII 600
  601 LLCVLTMEIS IIGSYLLMRF CFEDKVVRNN WRWKCFEMGF SGGVYMELYS LYYIFAVLNI 660
  661 HGFSSILISI CYSLIFNVMC SLGLGALSYL TASWFINKIY HQKVNL