YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIC2
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNKQPRKI QLYTKEFYAT CTLGGIIACG PTHSSITPLD LVKCRLQVNP KLYTSNLQGF  60
   61 RKIIANEGWK KVYTGFGATF VGYSLQGAGK YGGYEYFKHL YSSWLSPGVT VYLMASATAE 120
  121 FLADIMLCPF EAIKVKQQTT MPPFCNNVVD GWKKMYAESG GMKAFYKGIV PLWCRQIPYT 180
  181 MCKFTSFEKI VQKIYSVLPK KKEEMNALQQ ISVSFVGGYL AGILCAAVSH PADVMVSKIN 240
  241 SERKANESMS VASKRIYQKI GFTGLWNGLM VRIVMIGTLT SFQWLIYDSF KAYVGLPTTG 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	71	0.58
Transmembrane Helix	72	87	0.40
Non-Cytoplasmic	88	108	0.67
Transmembrane Helix	109	128	0.48
Cytoplasmic	129	262	0.56
Transmembrane Helix	263	287	0.78
Non-Cytoplasmic	288	300	0.65