YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HVG1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYTSSKSLQ YLAVPIYTIF KNLTIILIAY GEVLFFGGKV TSMELTSFIM MVLSSVVATW  60
   61 GDQQAIAIKA SSLEDLDQEL VESTIFVLNP GYLWMFTNCI SSALFVLIMR KRIRLTNFKD 120
  121 YDTMFYNNVL ALPLLLVFSF IMEDWSTKNL SVNLSADSLA AMVISGLMSV GISYCSGWCV 180
  181 RVTSSTTYSM VGALNKLPIA LAGLVFFDAP KNFLSFFSIF LGFLSGLLYA VAKQKKIQQQ 240
  241 KVLAATLEK

Type	Start	End	Confidence
Cytoplasmic	1	16	0.49
Transmembrane Helix	17	38	0.74
Non-Cytoplasmic	39	89	0.69
Transmembrane Helix	90	109	0.92
Cytoplasmic	110	123	0.88
Transmembrane Helix	124	142	0.95
Non-Cytoplasmic	143	157	0.85
Transmembrane Helix	158	178	0.92
Cytoplasmic	179	186	0.75
Transmembrane Helix	187	207	0.89
Non-Cytoplasmic	208	212	0.87
Transmembrane Helix	213	232	0.94
Cytoplasmic	233	249	0.96