YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHO1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVESDEDFAP QEFPHTDTDV IVNEHRDEND GYASDEVGGT LSRRASSIFS INTTPLAPPN  60
   61 ATDIQKFTSD EHHFSMMRNL HMADYITMLN GFSGFYSIVS CLRFTLTGKP HYVQRAHFFI 120
  121 LLGMCFDFLD GRVARLRNRS SLMGQELDSL ADLVSFGVAP AAIAFAIGFQ TTFDVMILSF 180
  181 FVLCGLARLA RFNVTVAQLP KDSSTGKSKY FEGLPMPTTL ALVLGMAYCV RKGLIFDNIP 240
  241 FGIFREDQIL EFHPIILVFF IHGCGMISKS LKIPKP

Type	Start	End	Confidence
Cytoplasmic	1	84	0.98
Transmembrane Helix	85	106	0.92
Non-Cytoplasmic	107	112	0.86
Transmembrane Helix	113	134	0.84
Cytoplasmic	135	148	0.91
Transmembrane Helix	149	169	0.90
Non-Cytoplasmic	170	174	0.75
Transmembrane Helix	175	192	0.90
Cytoplasmic	193	212	0.80
Transmembrane Helix	213	231	0.89
Non-Cytoplasmic	232	248	0.84
Transmembrane Helix	249	271	0.83
Cytoplasmic	272	276	0.88