YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.99
Transmembrane Helix	67	86	0.91
Non-Cytoplasmic	87	104	0.89
Transmembrane Helix	105	126	0.89
Cytoplasmic	127	131	0.88
Transmembrane Helix	132	152	0.90
Non-Cytoplasmic	153	161	0.70
Transmembrane Helix	162	183	0.89
Cytoplasmic	184	191	0.79
Transmembrane Helix	192	211	0.92
Non-Cytoplasmic	212	225	0.85
Transmembrane Helix	226	250	0.87
Cytoplasmic	251	279	0.98
Transmembrane Helix	280	305	0.83
Non-Cytoplasmic	306	313	0.85
Transmembrane Helix	314	335	0.92
Cytoplasmic	336	353	0.87
Transmembrane Helix	354	371	0.95
Non-Cytoplasmic	372	393	0.90
Transmembrane Helix	394	414	0.94
Cytoplasmic	415	421	0.87
Transmembrane Helix	422	440	0.97
Non-Cytoplasmic	441	447	0.77
Transmembrane Helix	448	468	0.94
Cytoplasmic	469	484	0.82
Transmembrane Helix	485	508	0.77
Non-Cytoplasmic	509	525	0.85
Transmembrane Helix	526	544	0.53
Cytoplasmic	545	555	0.52
Transmembrane Helix	556	579	0.86
Non-Cytoplasmic	580	628	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPGIANHTL PEEFEEVVVP EMLEKEVGAK VDVKPTLTTS SPAPSYIELI DPGVHNIEIY  60
   61 AEMYNRPIYR VALFFSLFLI AYAYGLDGNI RYTFQAYATS SYSQHSLLST VNCIKTVIAA 120
  121 VGQIFFARLS DIFGRFSIMI VSIIFYSMGT IIESQAVNIT RFAVGGCFYQ LGLTGIILIL 180
  181 EVIASDFSNL NWRLLALFIP ALPFIINTWI SGNVTSAIDA NWKWGIGMWA FILPLACIPL 240
  241 GICMLHMRYL ARKHAKDRLK PEFEALNKLK WKSFCIDIAF WKLDIIGMLL ITVFFGCVLV 300
  301 PFTLAGGLKE EWKTAHIIVP EVIGWVVVLP LYMLWEIKYS RHPLTPWDLI QDRGIFFALL 360
  361 IAFFINFNWY MQGDYMYTVL VVAVHESIKS ATRITSLYSF VSVIVGTILG FILIKVRRTK 420
  421 PFIIFGISCW IVSFGLLVHY RGDSGAHSGI IGSLCLLGFG AGSFTYVTQA SIQASAKTHA 480
  481 RMAVVTSLYL ATYNIGSAFG SSVSGAVWTN ILPKEISKRI SDPTLAAQAY GSPFTFITTY 540
  541 TWGTPERIAL VMSYRYVQKI LCIIGLVFCF PLLGCAFMLR NHKLTDSIAL EGNDHLESKN 600
  601 TFEIEEKEES FLKNKFFTHF TSSKDRKD