YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AVT2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.99
Transmembrane Helix	71	92	0.91
Non-Cytoplasmic	93	99	0.78
Transmembrane Helix	100	120	0.89
Cytoplasmic	121	143	0.88
Transmembrane Helix	144	165	0.94
Non-Cytoplasmic	166	185	0.90
Transmembrane Helix	186	206	0.93
Cytoplasmic	207	216	0.85
Transmembrane Helix	217	238	0.92
Non-Cytoplasmic	239	256	0.93
Transmembrane Helix	257	281	0.82
Cytoplasmic	282	293	0.90
Transmembrane Helix	294	315	0.93
Non-Cytoplasmic	316	335	0.87
Transmembrane Helix	336	357	0.70
Cytoplasmic	358	386	0.76
Transmembrane Helix	387	410	0.76
Non-Cytoplasmic	411	412	0.55
Transmembrane Helix	413	433	0.78
Cytoplasmic	434	444	0.89
Transmembrane Helix	445	467	0.92
Non-Cytoplasmic	468	480	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELGEYSKL ENKELRTEFE LTNFPFPGTT DNDSDDGSQG QNSLNIITPD MDDTLVNDVL  60
   61 RENDKKSSMR MAFMNLANSI LGAGIITQPF AIKNAGILGG LLSYVALGFI VDWTLRLIVI 120
  121 NLTLAGKRTY QGTVEHVMGK KGKLLILFTN GLFAFGGCIG YCIIIGDTIP HVLRAIFSQN 180
  181 DGNVHFWLRR NVIIVMVTTF ISFPLSMKRN IEALSKASFL AVISMIIIVL TVVIRGPMLP 240
  241 YDWKGHSLKL SDFFMKATIF RSLSVISFAL VCHHNTSFIF FSMRNRSVAK FTRLTHISII 300
  301 ISVICCALMG YSGFAVFKEK TKGNVLNSFP GTDTAINIAR LCFGFNMLTT FPMEIFVLRD 360
  361 VVGNLLHECN LIKNYDEHTQ LSGKQHVVIT SSLVFITMGI SLTTCNLGAL FELIGATTAS 420
  421 TMAYILPPYT NLLLTSKKKS WKERLPFYLC ICFGFMIMII SSTQTIIDAV NGSDGQHCQI 480
  481