YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CUP5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELCPVYAP FFGAIGCASA IIFTSLGAAY GTAKSGVGIC ATCVLRPDLL FKNIVPVIMA  60
   61 GIIAIYGLVV SVLVCYSLGQ KQALYTGFIQ LGAGLSVGLS GLAAGFAIGI VGDAGVRGSS 120
  121 QQPRLFVGMI LILIFAEVLG LYGLIVALLL NSRATQDVVC

Type	Start	End	Confidence
Cytoplasmic	1	6	0.73
Transmembrane Helix	7	29	0.88
Non-Cytoplasmic	30	53	0.68
Transmembrane Helix	54	78	0.87
Cytoplasmic	79	86	0.63
Transmembrane Helix	87	111	0.87
Non-Cytoplasmic	112	124	0.68
Transmembrane Helix	125	149	0.87
Cytoplasmic	150	160	0.68