YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YEA6
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNGDNKTTL ENSKNASLAN GNYAIPTKLN RLKKNADPRV AAISGALSGA LSAMLVCPFD  60
   61 VAKTRLQAQG LQNMTHQSQH YKGFFGTFAT IFKDEGAAGL YKGLQPTVLG YIPTLMIYFS 120
  121 VYDFCRKYSV DIFPHSPFLS NASSAITAGA ISTVATNPIW VVKTRLMLQT GIGKYSTHYK 180
  181 GTIDTFRKII QQEGAKALYA GLVPALLGML NVAIQFPLYE NLKIRFGYSE STDVSTDVTS 240
  241 SNFQKLILAS MLSKMVASTV TYPHEILRTR MQLKSDLPNT VQRHLLPLIK ITYRQEGFAG 300
  301 FYSGFATNLV RTVPAAVVTL VSFEYSKKYL TTFFQ

Type	Start	End	Confidence
Cytoplasmic	1	39	0.82
Transmembrane Helix	40	62	0.61
Non-Cytoplasmic	63	141	0.67
Transmembrane Helix	142	161	0.67
Cytoplasmic	162	196	0.69
Transmembrane Helix	197	219	0.69
Non-Cytoplasmic	220	335	0.64