YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YEA4
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWNSLKAFAL VFGGCCSNVI TFETLMSNET GSINNLITFC QFLFVTCQGL PEFLDVHQPF  60
   61 PYFKPLKTPL HVYVITVVLF YISSTTNNNV FKYNISIPIH IVFRCFGTVI TMFTCWLLNG 120
  121 RKYTKIQILS TLFLTIGAII ASLFKDADFR YQDLKLQAWK IGSDQSVDLT FIFGICILVL 180
  181 SSFTSSLLSA YNERTYQKYG KHWKENIFYS HFLSLPLFLF SRKQLIHEYR VMRKSERILC 240
  241 SNFGGKILVP REETLLLFNV LTQYFCVKGV NILASKTNAL TLSITLLVRK FISLLLSVRL 300
  301 FDNNLSYTGY IGVYLVFFGA FIYSLGSIHP RQNDKGAIKK SK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.71
Transmembrane Helix	7	26	0.72
Non-Cytoplasmic	27	34	0.50
Transmembrane Helix	35	54	0.45
Cytoplasmic	55	68	0.43
Transmembrane Helix	69	87	0.77
Non-Cytoplasmic	88	96	0.50
Transmembrane Helix	97	118	0.89
Cytoplasmic	119	125	0.52
Transmembrane Helix	126	144	0.92
Non-Cytoplasmic	145	168	0.53
Transmembrane Helix	169	191	0.90
Cytoplasmic	192	278	0.67
Transmembrane Helix	279	298	0.59
Non-Cytoplasmic	299	306	0.68
Transmembrane Helix	307	328	0.88
Cytoplasmic	329	342	0.81