YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STL1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	48	0.83
Non-Cytoplasmic	49	79	0.88
Transmembrane Helix	80	100	0.89
Cytoplasmic	101	108	0.87
Transmembrane Helix	109	131	0.92
Non-Cytoplasmic	132	136	0.82
Transmembrane Helix	137	158	0.92
Cytoplasmic	159	168	0.92
Transmembrane Helix	169	189	0.93
Non-Cytoplasmic	190	201	0.84
Transmembrane Helix	202	223	0.87
Cytoplasmic	224	292	0.97
Transmembrane Helix	293	313	0.74
Non-Cytoplasmic	314	327	0.69
Transmembrane Helix	328	351	0.90
Cytoplasmic	352	358	0.79
Transmembrane Helix	359	379	0.94
Non-Cytoplasmic	380	387	0.75
Transmembrane Helix	388	411	0.90
Cytoplasmic	412	425	0.75
Transmembrane Helix	426	447	0.81
Non-Cytoplasmic	448	453	0.66
Transmembrane Helix	454	473	0.92
Cytoplasmic	474	569	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLKLSNFK GKFISRTSHW GLTGKKLRYF ITIASMTGFS LFGYDQGLMA SLITGKQFNY  60
   61 EFPATKENGD HDRHATVVQG ATTSCYELGC FAGSLFVMFC GERIGRKPLI LMGSVITIIG 120
  121 AVISTCAFRG YWALGQFIIG RVVTGVGTGL NTSTIPVWQS EMSKAENRGL LVNLEGSTIA 180
  181 FGTMIAYWID FGLSYTNSSV QWRFPVSMQI VFALFLLAFM IKLPESPRWL ISQSRTEEAR 240
  241 YLVGTLDDAD PNDEEVITEV AMLHDAVNRT KHEKHSLSSL FSRGRSQNLQ RALIAASTQF 300
  301 FQQFTGCNAA IYYSTVLFNK TIKLDYRLSM IIGGVFATIY ALSTIGSFFL IEKLGRRKLF 360
  361 LLGATGQAVS FTITFACLVK ENKENARGAA VGLFLFITFF GLSLLSLPWI YPPEIASMKV 420
  421 RASTNAFSTC TNWLCNFAVV MFTPIFIGQS GWGCYLFFAV MNYLYIPVIF FFYPETAGRS 480
  481 LEEIDIIFAK AYEDGTQPWR VANHLPKLSL QEVEDHANAL GSYDDEMEKE DFGEDRVEDT 540
  541 YNQINGDNSS SSSNIKNEDT VNDKANFEG