YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FIT1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSSAFVLS AITVAALGES ITTTITATKN GHVYTKTVTQ DATFVWAGEG AAVTSAVTEA  60
   61 STVAATSAAA ETSVAAETSI VEPSTSAQGT SADEGSGSSI TTTITATKNG HVYTKTVTQD 120
  121 ATFVWTGEGE RAPASTVATV ETSVAAETSV AEPSTSAQGT SADEGSGSSI TTTITATKNG 180
  181 HVYTKTVTQD ATFVWTGEGE RAPVSTVATV ETAASPVTSV AEPSASTDEG SGSSITTTIT 240
  241 ATKNGHVYTK TVTQDATFVW TGEGERAPAS TVATSSISAI EIPSTTEASI VEASSAVETS 300
  301 SAAETSSAVE TSSAVETSSA VETSSAAETS SAAETSSAVE TSSAVEISSA VETSAVETSS 360
  361 SSSTIETTSV KSLSPTQTSL SSSVQASSPI ETSSAAKTSS VVPTFSSTTT ENSSNSKSTS 420
  421 AVVASTTTSS ESSATIVTPT RIGQAYTESS SRDAQSVRTH ESNNWSSSSS ASTKMVSSIT 480
  481 RVQTTTAGIF TNGKSSTTPQ IVNYTGAADS IAAGTGLMGA ALAAVIFL

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	505	0.99
Transmembrane Helix	506	527	0.54
Cytoplasmic	528	528	0.55