YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GNP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	153	0.98
Transmembrane Helix	154	175	0.85
Non-Cytoplasmic	176	182	0.81
Transmembrane Helix	183	207	0.84
Cytoplasmic	208	219	0.75
Transmembrane Helix	220	242	0.80
Non-Cytoplasmic	243	264	0.78
Transmembrane Helix	265	282	0.94
Cytoplasmic	283	293	0.71
Transmembrane Helix	294	317	0.84
Non-Cytoplasmic	318	342	0.88
Transmembrane Helix	343	363	0.89
Cytoplasmic	364	381	0.96
Transmembrane Helix	382	403	0.93
Non-Cytoplasmic	404	434	0.94
Transmembrane Helix	435	455	0.92
Cytoplasmic	456	481	0.88
Transmembrane Helix	482	500	0.95
Non-Cytoplasmic	501	508	0.81
Transmembrane Helix	509	531	0.92
Cytoplasmic	532	552	0.92
Transmembrane Helix	553	576	0.89
Non-Cytoplasmic	577	590	0.83
Transmembrane Helix	591	611	0.86
Cytoplasmic	612	663	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLGNRRHGR NNEGSSNMNM NRNDLDDVSH YEMKEIQPKE KQIGSIEPEN EVEYFEKTVE  60
   61 KTIENMEYEG EHHASYLRRF IDSFRRAEGS HANSPDSSNS NGTTPISTKD SSSQLDNELN 120
  121 RKSSYITVDG IKQSPQEQEQ KQENLKKSIK PRHTVMMSLG TGIGTGLLVG NSKVLNNAGP 180
  181 GGLIIGYAIM GSCVYCIIQA CGELAVIYSD LIGGFNTYPL FLVDPALGFS VAWLFCLQWL 240
  241 CVCPLELVTA SMTIKYWTTS VNPDVFVVIF YVLIVVINVF GAKGYAEADF FFNCCKILMI 300
  301 VGFFILAIII DCGGAGTDGY IGSKYWRDPG AFRGDTPIQR FKGVVATFVT AAFAFGMSEQ 360
  361 LAMTASEQSN PRKAIPSAAK KMIYRILFVF LASLTLVGFL VPYTSDQLLG AAGSATKASP 420
  421 YVIAVSSHGV RVVPHFINAV ILLSVLSVAN GAFYTSSRIL MSLAKQGNAP KCFDYIDREG 480
  481 RPAAAMLVSA LFGVIAFCAS SKKEEDVFTW LLAISGLSQL FTWITICLSH IRFRRAMKVQ 540
  541 GRSLGEVGYK SQVGVWGSAY AVLMMVLALI AQFWVAIAPI GGGGKLSAQS FFENYLAMPI 600
  601 WIALYIFYKV WKKDWSLFIP ADKVDLVSHR NIFDEELLKQ EDEEYKERLR NGPYWKRVLD 660
  661 FWC