YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISVMADEKH KEYFKLYYFQ YMIIGLCTIL FLYSEISLVP RGQNIEFSLD DPSISKRYVP  60
   61 NELVGPLECL ILSVGLSNMV VFWTCMFDKD LLKKNRVKRL RERPDGISND FHFMHTSILC 120
  121 LMLIISINAA LTGALKLIIG NLRPDFVDRC IPDLQKMSDS DSLVFGLDIC KQTNKWILYE 180
  181 GLKSTPSGHS SFIVSTMGFT YLWQRVFTTR NTRSCIWCPL LALVVMVSRV IDHRHHWYDV 240
  241 VSGAVLAFLV IYCCWKWTFT NLAKRDILPS PVSV

Type	Start	End	Confidence
Cytoplasmic	1	15	0.96
Transmembrane Helix	16	37	0.89
Non-Cytoplasmic	38	68	0.90
Transmembrane Helix	69	87	0.93
Cytoplasmic	88	110	0.86
Transmembrane Helix	111	132	0.89
Non-Cytoplasmic	133	185	0.92
Transmembrane Helix	186	203	0.92
Cytoplasmic	204	213	0.75
Transmembrane Helix	214	231	0.93
Non-Cytoplasmic	232	239	0.69
Transmembrane Helix	240	259	0.93
Cytoplasmic	260	274	0.95