YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SEC20
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVTFLQDLE VLQDALLNNL QKLSAISRRK ESGESKHDNK DSFAAIANEH NDEEEEIEFE  60
   61 DLVNIIESKV SDFESVLKCS IVEMTYKYPE LKLQWEKSPR YDQCDKLHIV KLDKQMNEDI 120
  121 YAQLVEELDF VLQFVDWFYC YRLKVKEILR QHHKRDLAWN DEKRDRAIKF HAVDYDKLHQ 180
  181 GTSSSSSLTS TSMEKASTRE KLLSKTKQLT NNLVRGNQIL QSGILQSDLN LDELRAQTNS 240
  241 LTQIDDKYTQ FETVFKKTAD LVKVLENASH QEKRDVYLSL GFLLCCVSWV LWRRIFKLPV 300
  301 KLGLWLLFKF FKGILVTLGL VKSYAGSSSS LQAPSLVLNA PILATTTTSS ATSVEPFASV 360
  361 SAVSSIQRAV DEAVDRIVSH DEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	275	0.90
Transmembrane Helix	276	296	0.84
Cytoplasmic	297	304	0.79
Transmembrane Helix	305	326	0.80
Non-Cytoplasmic	327	383	0.75