YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IZH1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITTTRRRN QDSVCCKATR ASIKVEAVSG QTVFEKQKLL HNFDELPEWQ KDNDKILTGY  60
   61 VRETLSWKKC LYSLFYWNNE TVNIYTHLVP AIVYFVFAIT LTNYFLIPVF PSTSWSDYTV 120
  121 INIFLMGAFS CLMCSSCFHC MKQHSEKQSN FWSKLDYLGI ISLISCSMIP IIYFGYFDHI 180
  181 SYFSLFTIVT LVLATFCTVC VLHDKFNTST FRPFRAMFFI LFGFSGLLPL TTGFFKFGIQ 240
  241 GVLNRIKVSF VFWEALFYIS GAVIYGFRIP ETLAPGKFDF FGSSHQIFHI MVVLGSVCHL 300
  301 KAIIDSYKLM HSHIHP

Type	Start	End	Confidence
Cytoplasmic	1	83	0.99
Transmembrane Helix	84	107	0.85
Non-Cytoplasmic	108	118	0.83
Transmembrane Helix	119	140	0.92
Cytoplasmic	141	154	0.88
Transmembrane Helix	155	176	0.90
Non-Cytoplasmic	177	181	0.81
Transmembrane Helix	182	202	0.92
Cytoplasmic	203	215	0.78
Transmembrane Helix	216	235	0.93
Non-Cytoplasmic	236	249	0.74
Transmembrane Helix	250	269	0.82
Cytoplasmic	270	284	0.76
Transmembrane Helix	285	304	0.80
Non-Cytoplasmic	305	316	0.68