YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERD1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSESNSEG LYLQNILNVP PPQRFIVLII LALWIWTWIL KFFLHSNLDV SQVILTRVPH  60
   61 DIRPGYTLQQ LHRTARNFAL KITRIIIPFH FATVFLFEFM NIIEGPLKNI ILIVYFLPLI 120
  121 QCVTIFWFLL KECQIIKYCT RRCLLIESSP RSLRNTYILI SDTLTSFGKP LIDFTLFTSL 180
  181 IFREPFTHFD LSVALLPVLV RLLQCLREYR LLHEATLLFN ALKYSCNLPI LFCTWRSRVY 240
  241 EGSINEERLH HVQRWFMLIN SSYTLFWDVR MDWSLDSLTS LRSRSKSAVT LKKKMYHSAI 300
  301 LVDFLLRFWW LWVYLSQNLK LVAADSDYIF FQGEMQYFEV IRRGIWVVFK LDAEYYIKFA 360
  361 SK

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.86
Transmembrane Helix	21	44	0.80
Cytoplasmic	45	81	0.86
Transmembrane Helix	82	103	0.84
Non-Cytoplasmic	104	109	0.82
Transmembrane Helix	110	130	0.94
Cytoplasmic	131	294	0.78
Transmembrane Helix	295	313	0.51
Non-Cytoplasmic	314	362	0.65