YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190404655
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPRNVRTL HGNGGRNNDV MGPKEFWLNI PPITRTLFTL AIVMTIVGRL NLINPWYFIY  60
   61 VWNLTFKKVQ IWRLLTSCVM LSSRAMPALM ELYSIYDRSS QLERGHFGPG LSNRRGPMVT 120
  121 VDYAYYLCFC ILAITTATTI IYGSYYPVVL TSGFISCITY TWSIDNANVQ IMFYGLIPVW 180
  181 GKYFPLIQLF ISFVFNEGDF VISLIGFTTG YLYTCLDTHT LGPIWGMISR KADPTYGISP 240
  241 NGKFSTPWWF TSLYARITGA HNETATFNNN FANVPSSQRE TRTFSGRGQR LGTAPATLSQ 300
  301 TSGTDSGRAS GSQLRSGPSN LNQFQGRGQR VGQTNSPSDS Q

Type	Start	End	Confidence
Cytoplasmic	1	32	0.73
Transmembrane Helix	33	53	0.84
Non-Cytoplasmic	54	70	0.58
Transmembrane Helix	71	88	0.71
Cytoplasmic	89	122	0.67
Transmembrane Helix	123	143	0.87
Non-Cytoplasmic	144	144	0.42
Transmembrane Helix	145	164	0.57
Cytoplasmic	165	170	0.45
Transmembrane Helix	171	192	0.61
Non-Cytoplasmic	193	199	0.54
Transmembrane Helix	200	221	0.64
Cytoplasmic	222	341	0.79