YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190404678
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSASSPQD LEKGVNTLEN IETLPQQGSI AGVSQGFPNI QEIYSDRDFI TLGSSTYRRR  60
   61 DLLNALDRGD GEEGNCAKYT PHQFANPVPL GLASFSLSCL VLSLINANVR GVTDGKWALS 120
  121 LFMFFGGAIE LFAGLLCFVI GDTYAMTVFS SFGGFWICYG YGLTDTDNLV SGYTDPTMLN 180
  181 NVIGFFLAGW TVFTFLMLMC TLKSTWGLFL LLTFLDLTFL LLCIGTFIDN NNLKMAGGYF 240
  241 GILSSCCGWY SLYCSVVSPS NSYLAFRAHT MPNAP

Type	Start	End	Confidence
Cytoplasmic	1	87	0.70
Transmembrane Helix	88	109	0.83
Non-Cytoplasmic	110	116	0.56
Transmembrane Helix	117	139	0.88
Cytoplasmic	140	143	0.52
Transmembrane Helix	144	163	0.68
Non-Cytoplasmic	164	178	0.84
Transmembrane Helix	179	200	0.88
Cytoplasmic	201	206	0.75
Transmembrane Helix	207	228	0.94
Non-Cytoplasmic	229	235	0.84
Transmembrane Helix	236	257	0.87
Cytoplasmic	258	275	0.82