YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|151942339
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSLLTLPK SFLGFMPLYL AVEIVLGISI LNKCSGAYGI LALFTGHPLD FMQWIAYLWS  60
   61 VFTLIVFSQG LYLIHKPNLL VFSQICVLYT IDTISTCFFT LWFTTQWFTL EDTANIDGNN 120
  121 ALQSNPISTG KLTERGIDIS KQSATESYEY TMTILITLVS LIFRFYFNFI LASFVQELLH 180
  181 HPKYLVDRDD VEQNLKNKPI WKRLWAKSQK GCYKLCKNLL E

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	32	0.85
Non-Cytoplasmic	33	53	0.75
Transmembrane Helix	54	74	0.93
Cytoplasmic	75	84	0.73
Transmembrane Helix	85	103	0.93
Non-Cytoplasmic	104	151	0.91
Transmembrane Helix	152	172	0.84
Cytoplasmic	173	221	0.90