YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111221221, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	176	0.99
Transmembrane Helix	177	195	0.91
Non-Cytoplasmic	196	201	0.77
Transmembrane Helix	202	222	0.92
Cytoplasmic	223	242	0.91
Transmembrane Helix	243	262	0.95
Non-Cytoplasmic	263	308	0.92
Transmembrane Helix	309	327	0.83
Cytoplasmic	328	346	0.86
Transmembrane Helix	347	369	0.94
Non-Cytoplasmic	370	381	0.75
Transmembrane Helix	382	398	0.94
Cytoplasmic	399	409	0.83
Transmembrane Helix	410	430	0.94
Non-Cytoplasmic	431	435	0.91
Transmembrane Helix	436	457	0.93
Cytoplasmic	458	466	0.84
Transmembrane Helix	467	488	0.88
Non-Cytoplasmic	489	503	0.89
Transmembrane Helix	504	525	0.91
Cytoplasmic	526	540	0.94
Transmembrane Helix	541	561	0.93
Non-Cytoplasmic	562	835	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRRRRGGT RLTSNDADTV PLASGDRQRR SSAEQQADTT PIGTRLGGPR SPAGGPQPRR  60
   61 STTEREGHFG DGRGGADRRL RDQAPRRHER TATERRPEPP APRPEPRTQR AEHRVRRDEA 120
  121 HVRRDEARVR RDEARVPVPT PQRPAAGRDP VRPPTRPEDD LDATGPVLAP LGHLPALDGL 180
  181 RAFAVMAVIA YHAGISWMPG GLLGVDTFFV LSGFLITGLL ITEYRNTRRI DLRSFWVRRS 240
  241 RRLMPALLVL LIGVAAYARW IASPGDVGTL RLDALSTLLY VANWRFALSD QSYFNHFSAP 300
  301 SPLLHTWSLS VEEQFYVLWP LVVFLLMRHS ARTVDRWRRQ RQKAQSLALT VAVLGAEASA 360
  361 LVGLALLLLG TDPSRIYYGT DSRAQALLVG AALAVWRGQR TRPISARARS VMSVVGCLAG 420
  421 VAMIVIWTTV SGENRALYAG GFLGVAVVVM LLVASLVEAP EGPVSKVLAL APLTFIGRIS 480
  481 YGLYLWHWPV FLTLTATRTG TDGVVLLLLR LGVTLAITLA SFHLVEDPIR RRRIRLPNPR 540
  541 LTVPAAFGGV LAVILVATAG TSASVRTPAQ LEALAKRAAA SPQPAVTVRP GTGAPIKVLL 600
  601 GGDSVALTLG FSDFSTMAAA KGIEIHDFSK LGCGVARGME RRVLGEAGPT TDGCDQWPQR 660
  661 FAQRVDEVDP ALALLLVGRW EVTDQLRDGR WTHIGDPAFD AYLGRELDLA ITTLGAKGAK 720
  721 VALLTTPIFK PTEAPDGSIY PETKATRVER FNVLLREAAA RHPGTSVIDI TSVLTPGNKY 780
  781 VDELDGVRLR DDDGVHISNG GARRIGAAII PQLLRIAQGS AADAAAPQTV GAGPG