YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI8
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIAMHLPLL LLYIFLLPLS GANNTDAAHE VIATNTNNWA VLVSTSRFWF NYRHMANVLS  60
   61 MYRTVKRLGI PDSQIILMLS DDVACNSRNL FPGSVFNNKD HAIDLYGDSV EVDYRGYEVT 120
  121 VENFIRLLTD RWTEDHPKSK RLLTDENSNI FIYMTGHGGD DFLKFQDAEE IASEDIADAF 180
  181 QQMYEKKRYN EIFFMIDTCQ ANTMYSKFYS PNILAVGSSE MDESSYSHHS DVEIGVAVID 240
  241 RFTYYCLDFL EQIDKNSTLT LQDLFDSFTF EKIHSHVGVR TDLFDRNPSE VLITDFFANV 300
  301 QNVIPDDSKP LSVSHYHHYK DHIDTAQYEL NNNVLDLALE TYRKNNQSSK IEKKIKDIKS 360
  361 TSVLDVDIDS NECFFTSFKQ SATIILALIV TILWFMLRGN TAKATYDLYT N

Type	Start	End	Confidence
Signal Peptide	1	27	0.91
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	380	0.99
Transmembrane Helix	381	398	0.81
Cytoplasmic	399	411	0.77