YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OMS1
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVFRRFPTC LLHHIRQPAS RSLLLESQRR SLSFTSYKYN SSHIDDDKSK KKLKNVFQMN  60
   61 SNRVIRKQKT KEELAKERFE EQLRSPNRFV RWGAIARSEK FSKGMTKYMI GAYVIFLIYG 120
  121 LFFTKKLFAK DKELERLLKK QEEGNANEYE ALRIKELKGK LRRRDELKLE EYKKMQEEGI 180
  181 ENFDDIRVQN FDQNKLNEQI LPARDTTNFY QEKANEYDKA INMEERVIFL GKRRKWLMKH 240
  241 CQGDVLEVSC GTGRNIKYLD MSRINSITFL DSSENMMEIT HKKFREKFPK YKKVAFVVGK 300
  301 AENLVDLAEK GKPSLENEKE NQVKYDTIVE AFGLCSHEDP VKALNNFGKL LKPDGRIILL 360
  361 EHGRGQYDFI NKILDNRAER RLNTWGCRWN LDLGEVLDDS DLELVEEKRT HLGTTWCIVA 420
  421 KRKGDVKKKD ELGFVEKYLQ SSIRKRMESF EKKDDMASKK ELEPVPPVSK S

Type	Start	End	Confidence
Cytoplasmic	1	103	0.66
Transmembrane Helix	104	123	0.62
Non-Cytoplasmic	124	471	0.97