YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAKKRTRKT VKKTVSFSDD TTLTTHQNRE KKNVDHDRPP VYVRKTPLMT FPYHLVALLY  60
   61 YYVFVSSNFN TVKLLSFLIP TQVAYLVLQF NKCTVYGNKI IKINYSLTII CLGVTFLLSF 120
  121 PTMLLTILFG APLMDLLWET WLLSLHFAFL AYPAVYSVFN CDFKVGLWKK YFIFIVVGGW 180
  181 ISCVVIPLDW DRDWQNWPIP IVVGGYLGAL VGYTIGAYI

Type	Start	End	Confidence
Cytoplasmic	1	47	0.87
Transmembrane Helix	48	64	0.64
Non-Cytoplasmic	65	71	0.49
Transmembrane Helix	72	90	0.60
Cytoplasmic	91	106	0.78
Transmembrane Helix	107	129	0.91
Non-Cytoplasmic	130	139	0.77
Transmembrane Helix	140	160	0.90
Cytoplasmic	161	170	0.77
Transmembrane Helix	171	190	0.94
Non-Cytoplasmic	191	196	0.89
Transmembrane Helix	197	217	0.93
Cytoplasmic	218	219	0.82