YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAB5
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVVGLTGGI ACGKSTVSRR LRDKYKLPIV DADKIARQVV EPGQNAYDQI VLYFKDKIPN  60
   61 LLLEDGHLNR EALGKWVFSH KEDLQALNGI THPAIRYAMF KEIGYYYLKG YRMCVLDVPL 120
  121 LFEGNLDSIC GVTVSVICTQ ELQLERLMTR NPELSEEDAK NRLNSQMSTE ERMARSDYIL 180
  181 QNNSTLVDLY EQIESVVKKI QPSKLRTVLE YFPPFGAVSA SSIVMSRLLM KKLQNKKSSA 240
  241 V

Type	Start	End	Confidence
Non-Cytoplasmic	1	210	0.96
Transmembrane Helix	211	230	0.55
Cytoplasmic	231	241	0.53