YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111309060, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNDSTGIL SSAYIAAEYI DTLLPDNPLQ PPFKYAWTYM IDNYTKFQIA TWGSLLVHEL  60
   61 IYFLFCLPGF IFQFLPFMQK YKIQQDKPET WESQWRCFKM LLFNHFCIQF PLIFGTFHFT 120
  121 EYFNIPYDWE SMPRWYILCA QCFGCAVIED AWHYFLHRIL HHKRIYKYIH KVHHEFTSPF 180
  181 GMQAEYAHPL ETLILGAGFF IGIMVFCNHV VLMWAWVMVR LLETIDVHSG YDIPLNPLHL 240
  241 FPFYAGARFH DFHHMNFVGN YASTFTWWDK ILSTDSQYNN YMDKVKAKPE KKTK

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.81
Transmembrane Helix	55	77	0.82
Cytoplasmic	78	100	0.77
Transmembrane Helix	101	119	0.93
Non-Cytoplasmic	120	134	0.79
Transmembrane Helix	135	156	0.71
Cytoplasmic	157	191	0.61
Transmembrane Helix	192	217	0.84
Non-Cytoplasmic	218	294	0.46