YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCF1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.90
Transmembrane Helix	31	50	0.91
Cytoplasmic	51	70	0.91
Transmembrane Helix	71	93	0.91
Non-Cytoplasmic	94	102	0.89
Transmembrane Helix	103	123	0.94
Cytoplasmic	124	133	0.78
Transmembrane Helix	134	155	0.86
Non-Cytoplasmic	156	167	0.78
Transmembrane Helix	168	186	0.95
Cytoplasmic	187	341	0.91
Transmembrane Helix	342	367	0.79
Non-Cytoplasmic	368	446	0.52
Transmembrane Helix	447	468	0.88
Cytoplasmic	469	530	0.96
Transmembrane Helix	531	553	0.87
Non-Cytoplasmic	554	566	0.80
Transmembrane Helix	567	589	0.85
Cytoplasmic	590	950	0.97
Transmembrane Helix	951	972	0.91
Non-Cytoplasmic	973	991	0.92
Transmembrane Helix	992	1017	0.89
Cytoplasmic	1018	1077	0.79
Transmembrane Helix	1078	1104	0.78
Non-Cytoplasmic	1105	1174	0.68
Transmembrane Helix	1175	1197	0.79
Cytoplasmic	1198	1203	0.47
Transmembrane Helix	1204	1219	0.57
Non-Cytoplasmic	1220	1515	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNLVSWAC KLCRSPEGFG PISFYGDFTQ CFIDGVILNL SAIFMITFGI RDLVNLCKKK  60
   61 HSGIKYRRNW IIVSRMALVL LEIAFVSLAS LNISKEEAEN FTIVSQYAST MLSLFVALAL 120
  121 HWIEYDRSVV ANTVLLFYWL FETFGNFAKL INILIRHTYE GIWYSGQTGF ILTLFQVITC 180
  181 ASILLLEALP KKPLMPHQHI HQTLTRRKPN PYDSANIFSR ITFSWMSGLM KTGYEKYLVE 240
  241 ADLYKLPRNF SSEELSQKLE KNWENELKQK SNPSLSWAIC RTFGSKMLLA AFFKAIHDVL 300
  301 AFTQPQLLRI LIKFVTDYNS ERQDDHSSLQ GFENNHPQKL PIVRGFLIAF AMFLVGFTQT 360
  361 SVLHQYFLNV FNTGMYIKSA LTALIYQKSL VLSNEASGLS STGDIVNLMS VDVQKLQDLT 420
  421 QWLNLIWSGP FQIIICLYSL YKLLGNSMWV GVIILVIMMP LNSFLMRIQK KLQKSQMKYK 480
  481 DERTRVISEI LNNIKSLKLY AWEKPYREKL EEVRNNKELK NLTKLGCYMA VTSFQFNIVP 540
  541 FLVSCCTFAV FVYTEDRALT TDLVFPALTL FNLLSFPLMI IPMVLNSFIE ASVSIGRLFT 600
  601 FFTNEELQPD SVQRLPKVKN IGDVAINIGD DATFLWQRKP EYKVALKNIN FQAKKGNLTC 660
  661 IVGKVGSGKT ALLSCMLGDL FRVKGFATVH GSVAYVSQVP WIMNGTVKEN ILFGHRYDAE 720
  721 FYEKTIKACA LTIDLAILMD GDKTLVGEKG ISLSGGQKAR LSLARAVYAR ADTYLLDDPL 780
  781 AAVDEHVARH LIEHVLGPNG LLHTKTKVLA TNKVSALSIA DSIALLDNGE ITQQGTYDEI 840
  841 TKDADSPLWK LLNNYGKKNN GKSNEFGDSS ESSVRESSIP VEGELEQLQK LNDLDFGNSD 900
  901 AISLRRASDA TLGSIDFGDD ENIAKREHRE QGKVKWNIYL EYAKACNPKS VCVFILFIVI 960
  961 SMFLSVMGNV WLKHWSEVNS RYGSNPNAAR YLAIYFALGI GSALATLIQT IVLWVFCTIH1020
 1021 ASKYLHNLMT NSVLRAPMTF FETTPIGRIL NRFSNDIYKV DALLGRTFSQ FFVNAVKVTF1080
 1081 TITVICATTW QFIFIIIPLS VFYIYYQQYY LRTSRELRRL DSITRSPIYS HFQETLGGLA1140
 1141 TVRGYSQQKR FSHINQCRID NNMSAFYPSI NANRWLAYRL ELIGSIIILG AATLSVFRLK1200
 1201 QGTLTAGMVG LSLSYALQIT QTLNWIVRMT VEVETNIVSV ERIKEYADLK SEAPLIVEGH1260
 1261 RPPKEWPSQG DIKFNNYSTR YRPELDLVLK HINIHIKPNE KVGIVGRTGA GKSSLTLALF1320
 1321 RMIEASEGNI VIDNIAINEI GLYDLRHKLS IIPQDSQVFE GTVRENIDPI NQYTDEAIWR1380
 1381 ALELSHLKEH VLSMSNDGLD AQLTEGGGNL SVGQRQLLCL ARAMLVPSKI LVLDEATAAV1440
 1441 DVETDKVVQE TIRTAFKDRT ILTIAHRLNT IMDSDRIIVL DNGKVAEFDS PGQLLSDNKS1500
 1501 LFYSLCMEAG LVNEN