YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM38B_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESPWNELTL AFSRTSMFPF FDIAHYLVSV MALKHQPGAA ALAWKNPLSS WFTAMLHCFG  60
   61 GGILSCVLLA EPPLRFLANN TNILLASSIW YIAFFCPCDL ISQAYSFLPV QLLAAGMKEV 120
  121 TRTWKIVGGV THANSYYKNG WIVMIAVGWA RGAGGSIITN FEQLVKGCWK PEAEEWLKMS 180
  181 YPAKVTLLGS VIFTFQQTKY LAISKHNLMF LFTVFLVATK ITMMITKTAL VPFACFEDTL 240
  241 SRMLFGWQQQ FSPCEKKSET KSSFNGTGSS TSKPVANASD KVKKKHSKKT E

Type	Start	End	Confidence
Cytoplasmic	1	9	0.85
Transmembrane Helix	10	33	0.70
Non-Cytoplasmic	34	49	0.72
Transmembrane Helix	50	70	0.92
Cytoplasmic	71	82	0.68
Transmembrane Helix	83	107	0.76
Non-Cytoplasmic	108	139	0.79
Transmembrane Helix	140	161	0.72
Cytoplasmic	162	180	0.73
Transmembrane Helix	181	198	0.50
Non-Cytoplasmic	199	207	0.43
Transmembrane Helix	208	224	0.73
Cytoplasmic	225	291	0.64