YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMS1_YEAST
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.82
Transmembrane Helix	7	29	0.84
Cytoplasmic	30	41	0.80
Transmembrane Helix	42	61	0.91
Non-Cytoplasmic	62	84	0.87
Transmembrane Helix	85	106	0.87
Cytoplasmic	107	119	0.84
Transmembrane Helix	120	139	0.88
Non-Cytoplasmic	140	149	0.59
Transmembrane Helix	150	170	0.88
Cytoplasmic	171	193	0.82
Transmembrane Helix	194	217	0.87
Non-Cytoplasmic	218	225	0.77
Transmembrane Helix	226	245	0.87
Cytoplasmic	246	295	0.63
Transmembrane Helix	296	318	0.76
Non-Cytoplasmic	319	398	0.53
Transmembrane Helix	399	422	0.83
Cytoplasmic	423	437	0.49
Transmembrane Helix	438	463	0.78
Non-Cytoplasmic	464	473	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVISLPVS MAGSFVASCF GGCCSNLVTK TASSLGSSSL GTRLLYAVWL LLNSLISWVS  60
   61 YSANKSILWP GKTCTGTGEC GFFTVHRLNF ALGCLHLILA LVLTGVKSTN DVRAALQNSW 120
  121 WSLKFILYLC LIVLSFVIPN DFYIFFSKWV SVPSGAIFIL VGLILLVDFA HEWAETCISH 180
  181 VESEDEDSSF WQRFLVLGTT SMYTASIIMT VVMYVMFCHQ QCNMNQTAVT VNLILTVITL 240
  241 VLSVNPKIQE ANPKSGLAQS SMVSVYCTYL TMSAMSSEPD DKMCNPLVRS SGTRKFSIIL 300
  301 GSLFTFIAIA YTTTRAAANS AFQGTNTNGA IYLGNDIEYE GLGGQTRNQL RYEAIKQAVE 360
  361 EGSLPESALY DTAWLGTSSP TGAMDNQNDD ERTGTKYNYT LFHVIFFLAT QWIAILLTIN 420
  421 VTQDDVGDFI PVGRTYFYSW VKIVSAWICY ALYGWTVVAP AIMPDRFDYE NYY