YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PST1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLHSLIAST ALLITSALAA TSSSSSIPSS CTISSHATAT AQSDLDKYSR CDTLVGNLTI  60
   61 GGGLKTGALA NVKEINGSLT IFNATNLTSF AADSLESITD SLNLQSLTIL TSASFGSLQS 120
  121 VDSIKLITLP AISSFTSNIK SANNIYISDT SLQSVDGFSA LKKVNVFNVN NNKKLTSIKS 180
  181 PVETVSDSLQ FSFNGNQTKI TFDDLVWANN ISLTDVHSVS FANLQKINSS LGFINNSISS 240
  241 LNFTKLNTIG QTFSIVSNDY LKNLSFSNLS TIGGALVVAN NTGLQKIGGL DNLTTIGGTL 300
  301 EVVGNFTSLN LDSLKSVKGG ADVESKSSNF SCNALKALQK KGGIKGESFV CKNGASSTSV 360
  361 KLSSTSKSQS SQTTAKVSKS SSKAEEKKFT SGDIKAAASA SSVSSSGASS SSSKSSKGNA 420
  421 AIMAPIGQTT PLVGLLTAII MSIM

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	419	0.99
Transmembrane Helix	420	441	0.68
Cytoplasmic	442	444	0.56