YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BAP3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.99
Transmembrane Helix	94	113	0.92
Non-Cytoplasmic	114	123	0.62
Transmembrane Helix	124	143	0.85
Cytoplasmic	144	161	0.82
Transmembrane Helix	162	183	0.85
Non-Cytoplasmic	184	203	0.82
Transmembrane Helix	204	223	0.93
Cytoplasmic	224	237	0.81
Transmembrane Helix	238	258	0.92
Non-Cytoplasmic	259	283	0.86
Transmembrane Helix	284	304	0.95
Cytoplasmic	305	323	0.91
Transmembrane Helix	324	344	0.92
Non-Cytoplasmic	345	375	0.92
Transmembrane Helix	376	395	0.91
Cytoplasmic	396	422	0.87
Transmembrane Helix	423	442	0.93
Non-Cytoplasmic	443	448	0.85
Transmembrane Helix	449	472	0.89
Cytoplasmic	473	494	0.91
Transmembrane Helix	495	517	0.86
Non-Cytoplasmic	518	531	0.85
Transmembrane Helix	532	552	0.87
Cytoplasmic	553	604	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPIVTSSK MEKSAEFEVT DSALYNNFNT STTASLTPEI KEHSEESRNG LVHRFVDSFR  60
   61 RAESQRLEED NDLEDGTKSM KSNNHLKKSM KSRHVVMMSL GTGIGTGLLV ANAKGLSLAG 120
  121 PGSLVIGYVM VSFVTYFMVQ AAGEMGVTYP TLPGNFNAYN SIFISKSFGF ATTWLFCIQW 180
  181 LTVLPLELIT SSMTVKYWND TINADVFIVI FYVFLLFIHF FGVKAYGETE FIFNSCKILM 240
  241 VAGFIILSVV INCGGAGVDG YIGGKYWRDP GSFAEGSGAT RFKGICYILV SAYFSFGGIE 300
  301 LFVLSINEQS NPRKSTPVAA KRSVYRILII YLLTMILIGF NVPHNNDQLM GSGGSATHAS 360
  361 PYVLAASIHK VRVIPHIINA VILISVISVA NSALYAAPRL MCSLAQQGYA PKFLNYIDRE 420
  421 GRPLRALVVC SLVGVVGFVA CSPQEEQAFT WLAAIAGLSE LFTWSGIMLS HIRFRKAMKV 480
  481 QGRSLDEVGY KANTGIWGSY YGVFFNMLVF MAQFWVALSP IGNGGKCDAQ AFFESYLAAP 540
  541 LWIFMYVGYM VYKRDFTFLN PLDKIDLDFH RRVYDPEIMR QEDEENKERL KNSSIFVRVY 600
  601 KFWC