YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190404995
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFETLIKR GGNEAIKINP PTGADFHITS RGSDWFWTCF CCYLLFGLIL TFLMFRKPVN  60
   61 DRFFYLTGIA PNFFMCIAYF TMASNLGWIP VKAKYNHVQT STQKEHPGYR QIFYSRFVGW 120
  121 FLALPWPIIQ ICMLAGTPFW QMAFNVCITE FFTVCWLIAA CVHSTYKWGY YTIGLGAAIV 180
  181 VSISVMTTSY NLVKQRDNDI RLTFLVFFSI IMFLWIIAYP TCFGITDGGN VLQPDSAGIF 240
  241 YGIIDLILMC FIPTLLVPIA NHFGADKLGY HFGPSDAEAV MAPKAPVASP RPAATPNLSK 300
  301 DKKKKSKKSK KSKKSKKSEE

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.86
Transmembrane Helix	35	55	0.95
Cytoplasmic	56	62	0.83
Transmembrane Helix	63	83	0.92
Non-Cytoplasmic	84	116	0.82
Transmembrane Helix	117	136	0.89
Cytoplasmic	137	142	0.62
Transmembrane Helix	143	163	0.81
Non-Cytoplasmic	164	170	0.69
Transmembrane Helix	171	193	0.90
Cytoplasmic	194	201	0.87
Transmembrane Helix	202	223	0.89
Non-Cytoplasmic	224	237	0.90
Transmembrane Helix	238	260	0.89
Cytoplasmic	261	320	0.97