YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111034986
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.86
Transmembrane Helix	11	33	0.84
Non-Cytoplasmic	34	66	0.94
Transmembrane Helix	67	87	0.92
Cytoplasmic	88	102	0.89
Transmembrane Helix	103	123	0.89
Non-Cytoplasmic	124	150	0.82
Transmembrane Helix	151	170	0.95
Cytoplasmic	171	178	0.83
Transmembrane Helix	179	198	0.93
Non-Cytoplasmic	199	203	0.74
Transmembrane Helix	204	222	0.90
Cytoplasmic	223	234	0.86
Transmembrane Helix	235	257	0.90
Non-Cytoplasmic	258	569	0.96
Transmembrane Helix	570	592	0.90
Cytoplasmic	593	608	0.90
Transmembrane Helix	609	628	0.93
Non-Cytoplasmic	629	636	0.79
Transmembrane Helix	637	659	0.77
Cytoplasmic	660	669	0.78
Transmembrane Helix	670	689	0.89
Non-Cytoplasmic	690	720	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQCVKLPVSV TVEINVLLLA VTALALFTRL YGIHFPKAVV FDEVYYGQFL SLYMKQVFFI  60
   61 DESGPPFGHM ILALGAYLGG FDGNFVWNRI GAEYPGNVPV RSLRLIPALA GSFCVPLAYL 120
  121 VVVELGYSHF SALGACALLL MENSLIVQSR FMLLESVLIF FLLLAVLSYL RFHKARNSFF 180
  181 KWFWLVICGV SCAFGIGVKY MGMFTYFLLL SLAAVHTWQL IGDQTLSHGK VMFQVLVRFL 240
  241 ALVMLPVIMY LGFFYIHLTL LYRSGPHDQM MSSAFQASLE GGLARITQGQ PLDVAFGSQV 300
  301 TLRTVSGKPV PCWLHSHKAN YPIRYENGRG SSHQQQVTCY PFKDVNNWWI IKDPGRQSLV 360
  361 VSSPPKPVRH GDIIQLLHGM TTRYLNTHDV AAPMSPHSQE VSGYIDFNVS MPAQNLWRVD 420
  421 IVNRESEKEI WKTILSEVRL VHVNTSAVLK LSGASLPEWG FKQLEVVGDK IYKGYQQTGM 480
  481 WNVEEHRYGR SQEPKERELE LKSPTHSDVN KNLTFMAKFL ELQWKMLTVK NEESEHKYSS 540
  541 SPLEWITMDT NIAYWLHPSS NAQIHFIGNI VTWTTGNITL VVYCLLFLTY LLRRRRKVED 600
  601 IPQDSWEQLV LAGVVCLGGW AVNYLPFFLM EKTLFLYHYL PALTFKILQI PIVTEHLYIH 660
  661 VLRSSAQQKA FGGVILAVLC SVYMSYHSLS PLTYGQPALT SDKLAELRWR ESWDILLRKR 720
  721